If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ), 'gf_id' => 'HOM05D000792', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000792' ), 'data_identifier' => 'HOM05D000792', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000792', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '746', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34820' => 'bna', 'A02p34830' => 'bna', 'A02p34840' => 'bna', 'A02p34860' => 'bna', 'A03p33980' => 'bna', 'A03p68270' => 'bna', 'A04p14170' => 'bna', 'A05p42490' => 'bna', 'A06p26840' => 'bna', 'A06p41720' => 'bna', 'A07p20690' => 'bna', 'A08p07330' => 'bna', 'A08p07340' => 'bna', 'A09p19470' => 'bna', 'Aa31LG2G12190' => 'aar', 'Aa31LG2G5720' => 'aar', 'Aa31LG5G11170' => 'aar', 'Aa31LG5G15360' => 'aar', 'Aa31LG9G710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2015' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.430' => 'aag', 'Actinidia05754' => 'ach', 'Actinidia05869' => 'ach', 'Actinidia05870' => 'ach', 'Actinidia33835' => 'ach', 'Ah.03g148350' => 'amhyb', 'Ah.03g148360' => 'amhyb', 'Ah.06g192810' => 'amhyb', 'Ah.06g192820' => 'amhyb', 'AL1G65000' => 'aly', 'AL3G10060' => 'aly', 'AL3G15470' => 'aly', 'AL5G15770' => 'aly', 'AL5G15790' => 'aly', 'AL5G15800' => 'aly', 'AL5G15810' => 'aly', 'AL7G48380' => 'aly', 'AL7G48430' => 'aly', 'Aqoxy2G03096' => 'aox', 'Aqoxy2G03102' => 'aox', 'Aqoxy5G03216' => 'aox', 'Aqoxy6G02449' => 'aox', 'Aqoxy6G02450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.21976M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X5C9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V9373' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R81VU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FU3KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GH6CGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM0P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GRVM6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5KI3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA3EPN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLEJ68' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS11D1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN738C' => 'arhy', 'AT1G54570' => 'ath', 'AT3G02030' => 'ath', 'AT3G05090' => 'ath', 'AT3G26820' => 'ath', 'AT3G26840' => 'ath', 'AT5G41120' => 'ath', 'AT5G41130' => 'ath', 'ATR0582G185' => 'atr', 'ATR0706G155' => 'atr', 'ATR0706G253' => 'atr', 'ATR0706G268' => 'atr', 'ATR0772G088' => 'atr', 'Atru.chr2.652' => 'acertr', 'Atru.chr2.653' => 'acertr', 'Atru.chr2.671' => 'acertr', 'Atru.chr2.688' => 'acertr', 'Atru.chr2.689' => 'acertr', 'Atru.chr6.2657' => 'acertr', 'Atru.chr6.2658' => 'acertr', 'Atru.chr6.2659_Atru.chr6.2660' => 'acertr', 'AUR62000947' => 'cqu', 'AUR62003382' => 'cqu', 'AUR62003383' => 'cqu', 'AUR62003384' => 'cqu', 'AUR62003385' => 'cqu', 'AUR62005021' => 'cqu', 'AUR62005022' => 'cqu', 'AUR62029445' => 'cqu', 'AUR62029446' => 'cqu', 'BcaB01g01536' => 'bca', 'BcaB02g07907' => 'bca', 'BcaB02g07909' => 'bca', 'BcaB04g17738' => 'bca', 'BcaB04g19281' => 'bca', 'BcaB05g23041' => 'bca', 'BcaB05g23043' => 'bca', 'BcaB05g24361' => 'bca', 'BcaB06g27600' => 'bca', 'BcaB07g30204' => 'bca', 'BcaB07g30205' => 'bca', 'BcaB07g30206' => 'bca', 'BcaB07g31095' => 'bca', 'BcaC01g04335' => 'bca', 'BcaC02g08983' => 'bca', 'BcaC03g17394' => 'bca', 'BcaC03g17396' => 'bca', 'BcaC03g17397' => 'bca', 'BcaC03g17399' => 'bca', 'BcaC04g22020' => 'bca', 'BcaC05g29993' => 'bca', 'BcaC06g31041' => 'bca', 'BcaC06g33885' => 'bca', 'BcaC06g33886' => 'bca', 'BcaC06g35737' => 'bca', 'BcaC06g35738' => 'bca', 'BcaC07g37425' => 'bca', 'BcaC07g37426' => 'bca', 'BcaC07g37427' => 'bca', 'BcaC08g44509' => 'bca', 'BcaNung05590' => 'bca', 'BolC2t11412H' => 'bol', 'BolC2t11415H' => 'bol', 'BolC2t11417H' => 'bol', 'BolC2t11418H' => 'bol', 'BolC2t11419H' => 'bol', 'BolC3t16419H' => 'bol', 'BolC4t26412H' => 'bol', 'BolC5t34873H' => 'bol', 'BolC6t37154H' => 'bol', 'BolC7t41623H' => 'bol', 'BolC7t44106H' => 'bol', 'BolC8t47749H' => 'bol', 'BolC8t47750H' => 'bol', 'BolC9t55369H' => 'bol', 'BraA01t02641Z' => 'bra', 'BraA02t08489Z' => 'bra', 'BraA02t08490Z' => 'bra', 'BraA02t08491Z' => 'bra', 'BraA02t08493Z' => 'bra', 'BraA03t12573Z' => 'bra', 'BraA04t17077Z' => 'bra', 'BraA05t23003Z' => 'bra', 'BraA06t25616Z' => 'bra', 'BraA06t27092Z' => 'bra', 'BraA07t29760Z' => 'bra', 'BraA08t32748Z' => 'bra', 'BraA09t37562Z' => 'bra', 'C02p53390' => 'bna', 'C02p53400' => 'bna', 'C02p53440' => 'bna', 'C03p41360' => 'bna', 'C04p48200' => 'bna', 'C05p62150' => 'bna', 'C06p19610' => 'bna', 'C07p11470' => 'bna', 'C07p35900' => 'bna', 'C08p06370' => 'bna', 'C08p09040' => 'bna', 'C09p24550' => 'bna', 'CAN.G1.52' => 'can', 'CAN.G134.196' => 'can', 'CAN.G473.147' => 'can', 'CANSAT54G2845' => 'cansat', 'CANSAT64G0925' => 'cansat', 'CARHR055640' => 'chi', 'CARHR074910' => 'chi', 'CARHR079410' => 'chi', 'CARHR110430' => 'chi', 'CARHR110440' => 'chi', 'CARHR147910' => 'chi', 'CARHR213240' => 'chi', 'CARHR213250' => 'chi', 'Carub.0002s0906' => 'cru', 'Carub.0003s0006' => 'cru', 'Carub.0003s0433' => 'cru', 'Carub.0005s0491' => 'cru', 'Carub.0005s0493' => 'cru', 'Carub.0005s0494' => 'cru', 'Carub.0005s0495' => 'cru', 'Carub.0007s3434' => 'cru', 'Carub.0007s3437' => 'cru', 'Ca_08107_v3' => 'car', 'Ca_09395_v3' => 'car', 'Ca_09396_v3' => 'car', 'Ca_10069_v3' => 'car', 'CBR_g23993' => 'cbr', 'CBR_g24002' => 'cbr', 'CBR_g38108' => 'cbr', 'CBR_g38109' => 'cbr', 'CBR_g39243' => 'cbr', 'CBR_g51918' => 'cbr', 'Cc00_g33700' => 'ccan', 'Cc02_g31120' => 'ccan', 'Cc02_g31140' => 'ccan', 'Cc02_g31160' => 'ccan', 'Cc02_g31180' => 'ccan', 'Cc02_g31240' => 'ccan', 'Cc02_g31250' => 'ccan', 'Cc02_g31260' => 'ccan', 'Cc07_g01130' => 'ccan', 'CDE02G3301' => 'cde', 'CDE02G3582' => 'cde', 'CDE08G0589' => 'cde', 'CDE09G0368' => 'cde', 'CDE09G1319' => 'cde', 'Cfa006484' => 'cfa', 'Cfa006485' => 'cfa', 'Cfa006487' => 'cfa', 'Cfa007185' => 'cfa', 'Cfa025693' => 'cfa', 'Ciclev10000367m.g' => 'ccl', 'Ciclev10000378m.g' => 'ccl', 'Ciclev10014442m.g' => 'ccl', 'Ciclev10014448m.g' => 'ccl', 'Ciclev10014452m.g' => 'ccl', 'Ciclev10014550m.g' => 'ccl', 'Ciclev10015254m.g' => 'ccl', 'Ciclev10016174m.g' => 'ccl', 'Ciclev10017437m.g' => 'ccl', 'CiPaw.03G003800' => 'cil', 'CiPaw.04G002600' => 'cil', 'CiPaw.07G009200' => 'cil', 'CiPaw.07G009400' => 'cil', 'CiPaw.08G177700' => 'cil', 'ClCG02G016320' => 'cla', 'ClCG02G016330' => 'cla', 'ClCG05G013970' => 'cla', 'COL.COLO4_13324' => 'col', 'COL.COLO4_13325' => 'col', 'COL.COLO4_13326' => 'col', 'COL.COLO4_13327' => 'col', 'COL.COLO4_13632' => 'col', 'COL.COLO4_13633' => 'col', 'Cpa.g.c29434' => 'cpa', 'Cpa.g.sc117.36' => 'cpa', 'Cpa.g.sc117.38' => 'cpa', 'Cpa.g.sc70.95' => 'cpa', 'Cpa.g.sc70.96' => 'cpa', 'Cpa.g.sc70.97' => 'cpa', 'Cre01.g017100' => 'cre', 'Cre08.g365950' => 'cre', 'Cre12.g521650' => 'cre', 'Cre13.g583250' => 'cre', 'CsaV3_2G004410' => 'csa', 'CsaV3_2G004420' => 'csa', 'CsaV3_3G026480' => 'csa', 'CSS0005362' => 'camsi', 'CSS0007645' => 'camsi', 'CSS0010028' => 'camsi', 'CSS0015984' => 'camsi', 'CSS0016163' => 'camsi', 'CSS0024788' => 'camsi', 'CSS0026682' => 'camsi', 'CSS0027954' => 'camsi', 'CSS0030690' => 'camsi', 'CSS0038276' => 'camsi', 'CSS0038400' => 'camsi', 'CSS0043695' => 'camsi', 'DCAR_014376' => 'dca', 'DCAR_017313' => 'dca', 'DCAR_029739' => 'dca', 'DCAR_029740' => 'dca', 'DCAR_029743' => 'dca', 'Dinv03361' => 'din', 'Dinv03363' => 'din', 'Dinv17744' => 'din', 'Dinv17747' => 'din', 'Dinv25628' => 'din', 'Duzib106G0823' => 'dzi', 'Duzib106G1171' => 'dzi', 'Duzib128G1364' => 'dzi', 'Duzib147G0486' => 'dzi', 'Duzib147G1053' => 'dzi', 'Duzib177G0519' => 'dzi', 'Duzib177G1082' => 'dzi', 'Duzib187G1490' => 'dzi', 'ECA232G1679' => 'eca', 'ECA232G4801' => 'eca', 'ECA233G0021' => 'eca', 'ECA233G2068' => 'eca', 'ECA238G2767' => 'eca', 'ECA240G0210' => 'eca', 'ECA240G0808' => 'eca', 'ECA240G0999' => 'eca', 'ECA240G3802' => 'eca', 'EL10Ac4g09219' => 'bvu', 'EL10Ac4g09220' => 'bvu', 'EL10Ac4g09221' => 'bvu', 'EL10Ac6g15463' => 'bvu', 'Eucgr.H04403' => 'egr', 'Eucgr.H04404' => 'egr', 'Eucgr.H04406' => 'egr', 'Eucgr.H04407' => 'egr', 'Eucgr.H04409' => 'egr', 'Eucgr.H04410' => 'egr', 'Eucgr.H04411' => 'egr', 'Eucgr.I01584' => 'egr', 'Eucgr.I01588' => 'egr', 'Eucgr.I01613' => 'egr', 'Eucgr.I01614' => 'egr', 'Eucgr.I01615' => 'egr', 'Eucgr.I01616' => 'egr', 'Eucgr.I01617' => 'egr', 'FAN02G1626' => 'fan', 'FAN02G2161' => 'fan', 'FAN02G3732' => 'fan', 'FAN02G4305' => 'fan', 'FAN05G0287' => 'fan', 'FAN05G4001' => 'fan', 'FAN05G4969' => 'fan', 'FAN09G2107' => 'fan', 'FAN11G0578' => 'fan', 'FAN11G2587' => 'fan', 'FAN14G0951' => 'fan', 'FAN14G3240' => 'fan', 'FAN21G0556' => 'fan', 'FAN21G1572' => 'fan', 'FvH4_3g35400' => 'fve', 'FvH4_3g39220' => 'fve', 'FvH4_3g39270' => 'fve', 'FvH4_3g39280' => 'fve', 'FvH4_6g03981' => 'fve', 'FvH4_6g03990' => 'fve', 'FvH4_6g04000' => 'fve', 'FvH4_6g04600' => 'fve', 'FvH4_6g54060' => 'fve', 'Glyma.03G243700' => 'gma', 'Glyma.03G243800' => 'gma', 'Glyma.03G244500' => 'gma', 'Glyma.04G104700' => 'gma', 'Glyma.09G075300' => 'gma', 'Glyma.10G159000' => 'gma', 'Glyma.16G018700' => 'gma', 'Glyma.16G051200' => 'gma', 'Glyma.16G051300' => 'gma', 'Glyma.18G118200' => 'gma', 'Glyma.19G099400' => 'gma', 'Glyma.19G241200' => 'gma', 'Glyma.19G241300' => 'gma', 'Glyma.19G241800' => 'gma', 'Gohir.A03G190500' => 'ghi', 'Gohir.A08G213800' => 'ghi', 'Gohir.A08G213900' => 'ghi', 'Gohir.A09G001100' => 'ghi', 'Gohir.A11G062900' => 'ghi', 'Gohir.A11G063000' => 'ghi', 'Gohir.A11G257200' => 'ghi', 'Gohir.A13G106300' => 'ghi', 'Gohir.A13G171400' => 'ghi', 'Gohir.D02G211400' => 'ghi', 'Gohir.D08G230833' => 'ghi', 'Gohir.D08G230866' => 'ghi', 'Gohir.D08G230900' => 'ghi', 'Gohir.D09G000900' => 'ghi', 'Gohir.D11G066550' => 'ghi', 'Gohir.D11G066600' => 'ghi', 'Gohir.D11G267100' => 'ghi', 'Gohir.D13G109000' => 'ghi', 'Gohir.D13G176800' => 'ghi', 'Gorai.004G245200' => 'gra', 'Gorai.004G245300' => 'gra', 'Gorai.005G239300' => 'gra', 'Gorai.006G001000' => 'gra', 'Gorai.007G072100' => 'gra', 'Gorai.007G286900' => 'gra', 'Gorai.013G122600' => 'gra', 'Gorai.013G202200' => 'gra', 'GSVIVG01021896001' => 'vvi', 'GSVIVG01021897001' => 'vvi', 'GSVIVG01033021001' => 'vvi', 'GSVIVG01033022001' => 'vvi', 'GSVIVG01033023001' => 'vvi', 'GSVIVG01033025001' => 'vvi', 'HanXRQChr03g0083991' => 'han', 'HanXRQChr08g0235961' => 'han', 'HanXRQChr08g0235971' => 'han', 'HanXRQChr12g0366721' => 'han', 'HanXRQChr13g0414151' => 'han', 'HanXRQChr13g0414161' => 'han', 'HanXRQChr13g0414171' => 'han', 'HanXRQChr14g0429451' => 'han', 'HanXRQChr15g0463101' => 'han', 'HanXRQChr15g0475811' => 'han', 'HanXRQChr15g0486741' => 'han', 'HanXRQChr15g0486751' => 'han', 'HanXRQChr16g0498011' => 'han', 'Haze_01717' => 'cav', 'Haze_04303' => 'cav', 'Haze_04304' => 'cav', 'Haze_04305' => 'cav', 'Haze_04306' => 'cav', 'Haze_14919' => 'cav', 'Haze_14923' => 'cav', 'Hma1.2p1_0083F.1_g042650' => 'hma', 'Hma1.2p1_0332F.1_g127900' => 'hma', 'Hma1.2p1_0332F.1_g127910' => 'hma', 'Hma1.2p1_0332F.1_g127920' => 'hma', 'Hma1.2p1_0525F.1_g172720' => 'hma', 'Hma1.2p1_0525F.1_g172730' => 'hma', 'Hma1.2p1_0525F.1_g172740' => 'hma', 'HPP92_016897' => 'vpl', 'HPP92_018397' => 'vpl', 'HPP92_025292' => 'vpl', 'Hund04250' => 'sun', 'Hund07002' => 'sun', 'Hund12848' => 'sun', 'Hund12849' => 'sun', 'Hund12850' => 'sun', 'Hund22093' => 'sun', 'Lalb_Chr15g0076961' => 'lal', 'Lalb_Chr15g0076971' => 'lal', 'Lalb_Chr18g0045241' => 'lal', 'Lalb_Chr18g0045251' => 'lal', 'Lalb_Chr18g0045261' => 'lal', 'Lalb_Chr22g0360101' => 'lal', 'Lj1g0010516' => 'lja', 'Lj1g0010529' => 'lja', 'Lj1g0010996' => 'lja', 'Lj1g0021051' => 'lja', 'Lj1g0023180' => 'lja', 'Lj5g0000884' => 'lja', 'Lj7A480G31' => 'lonja', 'Lj7A480T36' => 'lonja', 'Lj7A480T38' => 'lonja', 'Lj7A614T43' => 'lonja', 'Lj7C479G6' => 'lonja', 'Lj7C480T3' => 'lonja', 'Lj7C614G12' => 'lonja', 'Lj9A672G81' => 'lonja', 'Lj9A673G36' => 'lonja', 'Lsat_1_v5_gn_0_840' => 'lsa', 'Lsat_1_v5_gn_2_64801' => 'lsa', 'Lsat_1_v5_gn_2_64821' => 'lsa', 'Lsat_1_v5_gn_2_6701' => 'lsa', 'Lsat_1_v5_gn_3_96121' => 'lsa', 'Lsat_1_v5_gn_4_110961' => 'lsa', 'Lsat_1_v5_gn_4_185980' => 'lsa', 'Lsat_1_v5_gn_4_186220' => 'lsa', 'Lsat_1_v5_gn_5_26640' => 'lsa', 'Lsat_1_v5_gn_5_31580' => 'lsa', 'Lsat_1_v5_gn_6_64501' => 'lsa', 'Lsat_1_v5_gn_6_79440' => 'lsa', 'Lsat_1_v5_gn_6_79480' => 'lsa', 'Lsat_1_v5_gn_6_79500' => 'lsa', 'Lsat_1_v5_gn_7_112901' => 'lsa', 'Lsat_1_v5_gn_7_48661' => 'lsa', 'Lsat_1_v5_gn_8_29340' => 'lsa', 'Lsat_1_v5_gn_9_94640' => 'lsa', 'Manes.04G090600' => 'mes', 'Manes.08G126500' => 'mes', 'Manes.09G158100' => 'mes', 'Manes.09G158200' => 'mes', 'Manes.09G158301' => 'mes', 'Manes.09G158400' => 'mes', 'Mapoly0016s0038' => 'mpo', 'Mapoly0034s0010' => 'mpo', 'Mapoly0040s0052' => 'mpo', 'Mapoly0149s0030' => 'mpo', 'MBI18_g12403_MAGBIO' => 'mbi', 'MBI18_g25810_MAGBIO' => 'mbi', 'MBI19_g08863_MAGBIO' => 'mbi', 'MBI19_g30848_MAGBIO' => 'mbi', 'MCO06G155' => 'mco', 'MCO14G132' => 'mco', 'MD04G1216900' => 'mdo', 'MD04G1217000' => 'mdo', 'MD09G1005800' => 'mdo', 'MD12G1233500' => 'mdo', 'MD12G1233600' => 'mdo', 'MD12G1233700' => 'mdo', 'MD17G1009900' => 'mdo', 'Medtr1g081830' => 'mtr', 'Medtr3g107900' => 'mtr', 'Medtr7g083130' => 'mtr', 'Medtr7g083140' => 'mtr', 'Medtr7g083180' => 'mtr', 'Medtr7g083200' => 'mtr', 'Medtr7g114340' => 'mtr', 'Medtr7g114370' => 'mtr', 'MELO3C004352.2' => 'cme', 'MELO3C004353.2' => 'cme', 'MELO3C014937.2' => 'cme', 'Migut.A00937' => 'egut', 'Migut.D01794' => 'egut', 'Migut.D01795' => 'egut', 'Migut.D01910' => 'egut', 'Migut.D01913' => 'egut', 'Migut.F00026' => 'egut', 'Migut.K00761' => 'egut', 'MSTRG.25584' => 'ama', 'MSTRG.3420' => 'ama', 'Nitab4.5_0000087g0250' => 'nta', 'Nitab4.5_0000245g0020' => 'nta', 'Nitab4.5_0000245g0030' => 'nta', 'Nitab4.5_0000519g0200' => 'nta', 'Nitab4.5_0000653g0140' => 'nta', 'Nitab4.5_0002172g0080' => 'nta', 'Nitab4.5_0003397g0010' => 'nta', 'Nitab4.5_0003397g0020' => 'nta', 'Nitab4.5_0006443g0020' => 'nta', 'Nitab4.5_0006443g0030' => 'nta', 'Nn3g21306' => 'nnu', 'Nn3g21315' => 'nnu', 'Nn4g22201' => 'nnu', 'Nn4g26004' => 'nnu', 'Oeu003790.1' => 'oeu', 'Oeu004838.1' => 'oeu', 'Oeu020407.1' => 'oeu', 'Oeu038577.1' => 'oeu', 'Oeu039467.1' => 'oeu', 'Oeu050775.1' => 'oeu', 'Oeu062742.1' => 'oeu', 'Oeu062743.1' => 'oeu', 'Os01g0361500' => 'osa', 'Os01g0361700' => 'osa', 'Os01g0362100' => 'osa', 'Os09g0509500' => 'osa', 'Os12g0165000' => 'osa', 'Peaxi162Scf00026g02224' => 'pax', 'Peaxi162Scf00071g00939' => 'pax', 'Peaxi162Scf00225g00032' => 'pax', 'Peaxi162Scf00225g00310' => 'pax', 'Peaxi162Scf00420g00745' => 'pax', 'PGR004G0598' => 'pgr', 'PGR004G0617' => 'pgr', 'PGR004G1622' => 'pgr', 'PGR004G2499' => 'pgr', 'PGR142G0323' => 'pgr', 'PGR142G1594' => 'pgr', 'PGR142G4037' => 'pgr', 'PGR142G4188' => 'pgr', 'PGSC0003DMG400020199' => 'stu', 'PGSC0003DMG400022495' => 'stu', 'Phvul.001G087700' => 'pvu', 'Phvul.001G087800' => 'pvu', 'Phvul.006G097700' => 'pvu', 'Phvul.006G097800' => 'pvu', 'Phvul.006G098200' => 'pvu', 'Phvul.007G184400' => 'pvu', 'Potri.001G323800' => 'ptr', 'Potri.001G324000' => 'ptr', 'Potri.001G324200' => 'ptr', 'Potri.001G324400' => 'ptr', 'Potri.005G046500' => 'ptr', 'Potri.005G046600' => 'ptr', 'Potri.005G046700' => 'ptr', 'Potri.005G046800' => 'ptr', 'Potri.013G033000' => 'ptr', 'Potri.013G033101' => 'ptr', 'Potri.013G033300' => 'ptr', 'Potri.013G033600' => 'ptr', 'Potri.013G033800' => 'ptr', 'Potri.017G062200' => 'ptr', 'Pp3c11_23260' => 'ppa', 'Pp3c14_23300' => 'ppa', 'Pp3c1_36050' => 'ppa', 'Pp3c20_8330' => 'ppa', 'Pp3c22_14400' => 'ppa', 'Pp3c2_9310' => 'ppa', 'Pp3c4_20900' => 'ppa', 'Pp3c8_19710' => 'ppa', 'PRCOL_00001163' => 'pco', 'PRCOL_00003455' => 'pco', 'PRCOL_00004864' => 'pco', 'Prupe.3G311200' => 'ppe', 'Prupe.6G336800' => 'ppe', 'Prupe.6G336900' => 'ppe', 'Psat0s3924g0120' => 'psa', 'Psat0s4348g0040' => 'psa', 'Psat1g151520' => 'psa', 'Psat3g008760' => 'psa', 'Psat3g008800' => 'psa', 'Psat3g095560' => 'psa', 'Psat3g095600' => 'psa', 'Psat3g095640' => 'psa', 'Psat3g095760' => 'psa', 'Psat3g095800' => 'psa', 'Psat4g217640' => 'psa', 'PSO017G3117' => 'pso', 'PSO017G6435' => 'pso', 'PSO017G7121' => 'pso', 'PSO170G0948' => 'pso', 'PSO170G5137' => 'pso', 'PSO210G7161' => 'pso', 'PSO478G3391' => 'pso', 'PSO478G3871' => 'pso', 'PSO782G1172' => 'pso', 'QL02p070235' => 'qlo', 'QL02p070287' => 'qlo', 'QL02p070332' => 'qlo', 'QL02p070362' => 'qlo', 'QL03p000051' => 'qlo', 'QL03p000062' => 'qlo', 'QL03p000090' => 'qlo', 'QL03p000120' => 'qlo', 'QL03p000244' => 'qlo', 'QL03p000546' => 'qlo', 'QL03p000745' => 'qlo', 'QL03p031068' => 'qlo', 'QL11p022097' => 'qlo', 'QL12p019882' => 'qlo', 'RcHm_v2.0_Chr2g0132041' => 'rch', 'RcHm_v2.0_Chr2g0132051' => 'rch', 'RcHm_v2.0_Chr2g0176241' => 'rch', 'RcHm_v2.0_Chr3g0452571' => 'rch', 'RcHm_v2.0_Chr3g0452581' => 'rch', 'RcHm_v2.0_Chr5g0070671' => 'rch', 'RcHm_v2.0_Chr5g0070681' => 'rch', 'RcHm_v2.0_Chr5g0070691' => 'rch', 'Rhsim05G0148600' => 'rsi', 'Rhsim05G0148700' => 'rsi', 'Rhsim10G0002800' => 'rsi', 'Sabra05G0042400' => 'sbr', 'Sabra05G0042500' => 'sbr', 'Sabra05G0042600' => 'sbr', 'Sabra05G0042700' => 'sbr', 'Sabra13G0032800' => 'sbr', 'Sabra13G0032900' => 'sbr', 'Sabra13G0033000' => 'sbr', 'Sabra16G0206500' => 'sbr', 'Sabra16G0206600' => 'sbr', 'Sabra16G0206700' => 'sbr', 'Sabra16G0206800' => 'sbr', 'Sabra16G0206900' => 'sbr', 'SalBow1G5642' => 'sbo', 'SalBow1G6792' => 'sbo', 'SalBow3G0211' => 'sbo', 'SalBow3G1757' => 'sbo', 'SalBow3G1798' => 'sbo', 'SalBow3G3326' => 'sbo', 'SalBow4G0077' => 'sbo', 'SalBow4G0645' => 'sbo', 'SalBow4G0653' => 'sbo', 'SalBow4G2028' => 'sbo', 'SalBow5G1543' => 'sbo', 'SalBow6G3490' => 'sbo', 'Sc03g0004810' => 'sci', 'Sc03g0004820' => 'sci', 'Sc09g0003660' => 'sci', 'Sc09g0003670' => 'sci', 'Sed0001760' => 'sed', 'Sed0005337' => 'sed', 'Sed0009127' => 'sed', 'Sed0009921' => 'sed', 'Sed0017738' => 'sed', 'Sed0026552' => 'sed', 'SEGI_03283' => 'sgi', 'SEGI_03866' => 'sgi', 'SEGI_21710' => 'sgi', 'SEGI_23814' => 'sgi', 'SEGI_28701' => 'sgi', 'SEGI_30570' => 'sgi', 'SEGI_34645' => 'sgi', 'SGA_v2.0_scaffold15G07272' => 'sas', 'SGA_v2.0_scaffold286G47081' => 'sas', 'SGA_v2.0_scaffold44G16940' => 'sas', 'SHI18278' => 'shi', 'SMO119G0178' => 'smo', 'SMO147G0389' => 'smo', 'SMO367G0211' => 'smo', 'Solyc01g098090.3' => 'sly', 'Solyc01g098110.4' => 'sly', 'Solyc02g094430.4' => 'sly', 'Solyc08g023570.2' => 'sly', 'Solyc08g023580.4' => 'sly', 'Solyc08g023590.4' => 'sly', 'Sopen00g011420' => 'spe', 'Sopen00g013820' => 'spe', 'Sopen01g041660' => 'spe', 'Sopen01g041680' => 'spe', 'Sopen02g039090' => 'spe', 'Sopen06g035080' => 'spe', 'Sopen08g008890' => 'spe', 'Sp2g15980' => 'spa', 'Sp2g15990' => 'spa', 'Sp2g20380' => 'spa', 'Sp3g00080' => 'spa', 'Sp3g03910' => 'spa', 'Sp7g00770' => 'spa', 'SpUn0001_0150' => 'spa', 'TAR362G0178' => 'tar', 'TAR362G0581' => 'tar', 'TAR362G1040' => 'tar', 'TAR365G0075' => 'tar', 'TAR365G0732' => 'tar', 'TAR365G1157' => 'tar', 'TAR374G0965' => 'tar', 'TAR622G0402' => 'tar', 'TAR636G2564' => 'tar', 'THA.LOC104805313' => 'tha', 'THA.LOC104808245' => 'tha', 'THA.LOC104818655' => 'tha', 'THA.LOC104821692' => 'tha', 'THA.LOC104823992' => 'tha', 'Thecc.04G043300' => 'tca', 'Thecc.04G043400' => 'tca', 'Thecc.04G043500' => 'tca', 'Thecc.05G291700' => 'tca', 'Thecc.05G291800' => 'tca', 'Thhalv10003731m.g' => 'esa', 'Thhalv10003736m.g' => 'esa', 'Thhalv10020130m.g' => 'esa', 'Thhalv10020241m.g' => 'esa', 'Thhalv10023311m.g' => 'esa', 'Thhalv10027670m.g' => 'esa', 'TPR.G11078' => 'tpr', 'TPR.G21116' => 'tpr', 'TPR.G35083' => 'tpr', 'TPR.G35084' => 'tpr', 'TPR.G5863' => 'tpr', 'TPR.G6928' => 'tpr', 'TPR.G7014' => 'tpr', 'TWI12G0870' => 'twi', 'TWI36G0731' => 'twi', 'TWI56G0161' => 'twi', 'TWI56G0514' => 'twi', 'TWI56G0897' => 'twi', 'TWI56G1259' => 'twi', 'TWI56G1300' => 'twi', 'TWI56G1396' => 'twi', 'TWI60G1375' => 'twi', 'unitig_21.g20357' => 'ugi', 'unitig_21.g20358' => 'ugi', 'unitig_27.g25324' => 'ugi', 'unitig_736.g22223' => 'ugi', 'unitig_744.g24443' => 'ugi', 'vmacro05987' => 'vma', 'vmacro05988' => 'vma', 'vmacro19666' => 'vma', 'vmacro19667' => 'vma', 'vmacro19668' => 'vma', 'vmacro19669' => 'vma', 'vmacro19671' => 'vma', 'vmacro23367' => 'vma', 'vmacro23368' => 'vma', 'VMungo0251G2782' => 'vmu', 'VMungo0540G0969' => 'vmu', 'VMungo0540G1958' => 'vmu', 'VMungo0540G2137' => 'vmu', 'VMungo0720G0333' => 'vmu', 'VMungo1383G0356' => 'vmu', 'VMungo1383G1756' => 'vmu', 'VMungo1383G2503' => 'vmu', 'Zm00001eb131690' => 'zma', 'Zm00001eb131700' => 'zma', 'Zm00001eb139400' => 'zma', 'Zm00001eb317940' => 'zma', 'Zm00001eb333910' => 'zma', 'Zm00001eb407650' => 'zma' ) $gf_id = 'HOM05D000792' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000792' ) $data_identifier = 'HOM05D000792' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 3, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 9, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 14, 'fan' => (int) 14, 'fve' => (int) 9, 'gma' => (int) 14, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 18, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 8, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 14, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 8, 'rsi' => (int) 3, 'sbr' => (int) 12, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb407650' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1